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Selected Publications

 

  1.  Hadas Zur, Tamir Tuller. New universal rules of eukaryotic translation initiation fidelity. PLoS Comput Biol. 9(7), 2013.

  2.  Shlomi Reuveni*, Isaac Meilijson, Martin Kupiec, Eytan Ruppin, Tamir Tuller. Genome-scale analysis of translation elongation with a       ribosome flow model. PLoS Comput Biol. 2011 Sep;7(9):e1002127

  3. Tamir Tuller, Asaf Carmi, Kalin Vestsigain, Sivan Navon, Yuval Dorfan, John Zaborske, Tao Pan, Orna Dahan, Itay Furman, Yitzhak Pilpel.    An evolutionarily conserved mechanism for controlling the efficiency of protein translation. Cell. 2010 Apr 16;141(2):344-54

  4. Tamir Tuller, Yedael Y. Waldman, Martin Kupiec, Eytan Ruppin. Translation Efficiency Is Determined By Both Codon Bias and Folding   Energy.Proc. Natl. Acad. Sci. USA. 2010 Feb 2

  5. T Tuller. Challenges and Obstacles Related to Solving the Codon Bias Riddles. To appear in Biochemical Society Transactions. 2013

  6. Gregory Linshiz, Tuval Ben Yehezkel, Shai Kaplan, Ilan Gronau, Sivan Ravid, Rivka Adar and Ehud Shapiro. Recursive construction of perfect DNA molecules fromimperfect oligonucleotides. Nature Molecular Systems Biology 4; Article number 191 doi:10.1038/msb.2008.26

  7. Uri Shabi, Shai Kaplan, Gregory Linshiz, Tuval BenYehezkel, Hen Buaron, Yair Mazor, Ehud Shapiro. Processing DNA molecules as text Syst Synth Biol (2010) 4:227–236DOI 10.1007/s11693-010-9059-y

  8. Widespread signatures of local mRNA folding structure selection in four Dengue virus serotypes. Goz E, Tuller T. BMC Genomics. 2015;16 Suppl 10:S4.

  9. Rationally designed, heterologous S. cerevisiae transcripts expose novel expression determinants. Ben-Yehezkel T, Atar S, Zur H, Diament A, Goz E, Marx T, Cohen R, Dana A, Feldman A, Shapiro E, Tuller T.RNA Biol. 2015;12(9):972-84.

  10. Multiple roles of the coding sequence 5' end in gene expression regulation. Tuller T, Zur H. Nucleic Acids Res. 2015 Jan;43(1):13-28.

  11. Exploiting hidden information interleaved in the redundancy of the genetic code without prior knowledge. Zur H, Tuller T. Bioinformatics. 2015 Apr 15;31(8):1161-8.

  12. Evidence of a Direct Evolutionary Selection for Strong Folding and Mutational Robustness Within HIVCoding Regions. Goz E, Tuller T. J Comput Biol. 2016 Aug;23(8):641-50.